With the advent of next-generation sequencing technologies, restriction-site associated DNA sequencing (RAD-seq) has become a mainstream method for rapidly obtaining high-density single nucleotide polymorphisms (SNPs) in organisms due to its independence from reference genomes.
Using reference genome of the species itself is optimal for SNP calling, finds study retrieved 15 May 2024 from https://phys.org/news/2024-05-genome-species-optimal-snp.html
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